STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_08196Ubiquitin carboxyl-terminal hydrolase. (935 aa)    
Predicted Functional Partners:
AMSG_08067
Ubiquitin/ribosomal protein S27 fusion protein.
   
 0.760
AMSG_07946
Ubiquitin C.
   
 0.722
AMSG_12202
Uncharacterized protein.
   
 0.722
AMSG_11874
Ubiquitin-like domain-containing protein.
    
  0.710
AMSG_10625
Ubiquitin-60S ribosomal protein L40.
    
  0.710
AMSG_07672
E3 ubiquitin-protein ligase UPL3.
   
 
 0.700
AMSG_00122
NEDD8 protein.
   
 0.659
AMSG_06761
UV excision repair protein Rad23.
   
 0.643
AMSG_12328
Uncharacterized protein.
   
 0.641
AMSG_09964
Ubiquitin-like domain-containing protein.
   
 0.641
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.