STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_07188ZZ-type domain-containing protein; Belongs to the MT-A70-like family. (1236 aa)    
Predicted Functional Partners:
AMSG_11780
Uncharacterized protein.
  
    0.784
AMSG_02344
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.562
AMSG_02836
Armadillo repeat-containing protein 2.
    
   0.552
AMSG_04752
Uncharacterized protein.
    
   0.552
AMSG_09252
DNA-directed RNA polymerase II subunit rpb7.
   
 
  0.550
AMSG_01464
DNA-directed RNA polymerase I, II, and III subunit RPABC5.
   
 
  0.549
AMSG_04435
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 
  0.538
AMSG_00072
UBX domain-containing protein.
   
 0.534
AMSG_00226
RNA polymerase II core subunit.
    
  0.531
AMSG_08250
RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein.
   
 
  0.531
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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