STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_12129EF-hand domain-containing protein. (355 aa)    
Predicted Functional Partners:
AMSG_09990
Uncharacterized protein.
   
 0.940
AMSG_03628
NURF complex component.
   
 0.920
AMSG_04941
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.902
AMSG_00421
Uncharacterized protein.
   
 
 0.902
AMSG_10584
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.902
AMSG_11961
MRG domain-containing protein.
    
 0.881
AMSG_03841
SANT domain-containing protein.
   
 0.840
AMSG_09605
mRNA_triPase domain-containing protein.
   
 0.840
AMSG_03159
Class II RPD3 type histone deacetylase.
   
 0.771
AMSG_05095
Deacetylase.
   
 0.771
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.