AMSG_08563 protein (Thecamonas trahens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AMSG_08563

Membrane protein. (153 aa)

Predicted Functional Partners:

AMSG_03204

0.886

AMSG_02854

0.798

AMSG_00191

0.767

AMSG_00499

0.762

AMSG_07555

0.759

AMSG_00026

0.748

AMSG_06074

0.745

AMSG_03605

0.743

AMSG_05228

0.739

AMSG_01540

0.737

Your Current Organism:

Thecamonas trahens

NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMSG_00026	AMSG_03204	A0A0L0D109	A0A0L0D3U4	Methionyl-tRNA formyltransferase.	Bifunctional dihydrofolate reductase-thymidylate synthase; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism; In the C-terminal section; belongs to the thymidylate synthase family.	0.975
AMSG_00026	AMSG_08563	A0A0L0D109	A0A0L0DMQ4	Methionyl-tRNA formyltransferase.	Membrane protein.	0.748
AMSG_00191	AMSG_00499	A0A0L0D460	A0A0L0D8Q6	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Brix domain-containing protein 2.	0.992
AMSG_00191	AMSG_01540	A0A0L0D460	A0A0L0DQW3	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.999
AMSG_00191	AMSG_02854	A0A0L0D460	A0A0L0D2K7	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Uncharacterized protein.	0.991
AMSG_00191	AMSG_03605	A0A0L0D460	A0A0L0D489	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Uncharacterized protein.	0.982
AMSG_00191	AMSG_05228	A0A0L0D460	A0A0L0DD35	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.983
AMSG_00191	AMSG_06074	A0A0L0D460	A0A0L0DCH6	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Nuclear export protein Noc3.	0.985
AMSG_00191	AMSG_07555	A0A0L0D460	A0A0L0DH21	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.991
AMSG_00191	AMSG_08563	A0A0L0D460	A0A0L0DMQ4	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	Membrane protein.	0.767
AMSG_00499	AMSG_00191	A0A0L0D8Q6	A0A0L0D460	Brix domain-containing protein 2.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.992
AMSG_00499	AMSG_01540	A0A0L0D8Q6	A0A0L0DQW3	Brix domain-containing protein 2.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.981
AMSG_00499	AMSG_02854	A0A0L0D8Q6	A0A0L0D2K7	Brix domain-containing protein 2.	Uncharacterized protein.	0.989
AMSG_00499	AMSG_03605	A0A0L0D8Q6	A0A0L0D489	Brix domain-containing protein 2.	Uncharacterized protein.	0.999
AMSG_00499	AMSG_05228	A0A0L0D8Q6	A0A0L0DD35	Brix domain-containing protein 2.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.993
AMSG_00499	AMSG_06074	A0A0L0D8Q6	A0A0L0DCH6	Brix domain-containing protein 2.	Nuclear export protein Noc3.	0.987
AMSG_00499	AMSG_07555	A0A0L0D8Q6	A0A0L0DH21	Brix domain-containing protein 2.	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.	0.995
AMSG_00499	AMSG_08563	A0A0L0D8Q6	A0A0L0DMQ4	Brix domain-containing protein 2.	Membrane protein.	0.762
AMSG_01540	AMSG_00191	A0A0L0DQW3	A0A0L0D460	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.999
AMSG_01540	AMSG_00499	A0A0L0DQW3	A0A0L0D8Q6	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	Brix domain-containing protein 2.	0.981