STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_09008Protein phosphatase 2C isoform gamma. (370 aa)    
Predicted Functional Partners:
AMSG_00453
Atypical/Alpha/MHCK protein kinase.
   
 0.595
AMSG_05677
E3 ubiquitin-protein ligase TRAF7.
   
 0.595
AMSG_02297
2-oxoisovalerate dehydrogenase subunit beta.
    
 0.563
AMSG_07758
STE/STE7 protein kinase; Belongs to the protein kinase superfamily.
    
  0.559
AMSG_07252
Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
    
 0.551
AMSG_06205
2-oxoisovalerate dehydrogenase subunit alpha; The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
   
  0.541
AMSG_00230
RING-type domain-containing protein.
   
 0.540
AMSG_11145
TNF-receptor-associated factor 1.
   
 0.540
AMSG_10041
Carbohydrate-binding module family 48 protein.
   
  0.530
AMSG_07251
GTP_cyclohydroI domain-containing protein.
    
  0.529
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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