STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_01209Atypical/RIO/RIO2 protein kinase. (443 aa)    
Predicted Functional Partners:
AMSG_00014
Ribosome biogenesis protein tsr1.
   
 0.999
AMSG_02733
Pre-rRNA-processing protein PNO1.
   
 0.999
AMSG_00620
Uncharacterized protein.
   
 0.999
AMSG_06497
RNA-binding protein NOB1; Belongs to the NOB1 family.
   
 0.999
AMSG_08278
40S ribosomal protein.
    
 0.999
AMSG_12203
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
    
 0.999
AMSG_03618
40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.
   
 0.998
AMSG_07948
30S ribosomal protein S10p/S20e.
   
 0.998
AMSG_01103
40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.
    
 0.998
AMSG_08375
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
    
 0.998
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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