STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_09862ATP-dependent DNA helicase MER3. (1001 aa)    
Predicted Functional Partners:
AMSG_09202
Pre-mRNA-processing-splicing factor 8.
   
 0.955
AMSG_03575
Activating signal cointegrator 1 complex subunit 2.
    
 0.920
AMSG_05062
Small nuclear ribonucleoprotein Sm D3.
   
 0.890
AMSG_05327
Small nuclear ribonucleoprotein Sm D2.
   
 0.890
AMSG_11749
Sm domain-containing protein.
   
 0.884
AMSG_04178
Small nuclear ribonucleoprotein SmG.
   
  0.881
AMSG_00821
Pre-mRNA splicing protein.
    
 0.878
AMSG_02462
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.870
AMSG_06169
Puff-specific protein Bx42.
    
 
 0.843
AMSG_11388
Pre-mRNA-processing factor 17.
    
 
 0.843
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.