STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_09962Uncharacterized protein. (329 aa)    
Predicted Functional Partners:
AMSG_04063
SH3 domain-containing protein.
    
  0.556
AMSG_08314
RNA-binding protein cabeza.
   
 
  0.546
AMSG_01562
RanBP2-type domain-containing protein.
   
 
  0.546
AMSG_03438
NEK/NEK6 protein kinase.
    
  0.536
AMSG_03262
RFX-type winged-helix domain-containing protein.
    
  0.536
AMSG_06895
SGT1a.
    
  0.532
AMSG_08067
Ubiquitin/ribosomal protein S27 fusion protein.
    
  0.532
AMSG_04110
Autophagy protein.
    
 0.527
AMSG_12141
Uncharacterized protein.
    
  0.518
AMSG_03608
26S proteasome non-ATPase regulatory subunit 14.
    
  0.513
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.