STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_01612Vacuolar protein-sorting-associated protein 25. (179 aa)    
Predicted Functional Partners:
AMSG_00415
Vacuolar-sorting protein SNF8.
   
 0.999
AMSG_09237
SNF7 family protein.
   
 0.999
AMSG_01944
Vacuolar protein-sorting-associated protein 36.
   
 0.999
AMSG_03064
Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.
   
 0.980
AMSG_07480
Charged multivesicular body protein 4a.
    
 0.895
AMSG_01751
Charged multivesicular body protein 2a.
   
 0.858
AMSG_09619
tRNA (adenine(58)-N(1))-methyltransferase.
 
      0.843
AMSG_05838
Charged multivesicular body protein 6-A.
    
 0.792
AMSG_02241
Charged multivesicular body protein 3.
     
 0.780
AMSG_01756
Tumor susceptibility 101.
   
 0.746
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.