STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_10303Uncharacterized protein. (556 aa)    
Predicted Functional Partners:
AMSG_00229
SPRY domain-containing protein.
    
 0.811
AMSG_10005
Retinoblastoma-binding protein 5.
    
 0.811
AMSG_11509
VEFS-Box domain-containing protein.
    
 0.795
AMSG_03628
NURF complex component.
   
 0.783
AMSG_06392
BAH-PHD domain-containing protein.
    
 
 0.768
AMSG_11915
Uncharacterized protein.
    
 0.765
AMSG_02422
Polycomb protein eed.
    
 0.765
AMSG_09203
SET domain-containing protein.
    
 0.737
AMSG_11431
26S proteasome non-ATPase regulatory subunit 3.
    
 0.737
AMSG_06760
Histone H2A.
   
 0.735
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.