STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_10238GTP-binding protein YchF. (372 aa)    
Predicted Functional Partners:
AMSG_08774
Uncharacterized protein.
  
 
  0.779
AMSG_00837
Uncharacterized protein.
  
 
 0.702
AMSG_06009
Leucine-rich repeats and guanylate kinase domain containing.
  
 
 0.702
AMSG_03498
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
   
 
  0.684
AMSG_03894
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen.
  
 
 0.680
AMSG_01338
Tetratricopeptide repeat domain 5.
  
 
 0.680
AMSG_10856
Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
     
 0.670
AMSG_06696
Glutathione S-transferase domain-containing protein; Belongs to the GST superfamily.
   
 
 0.649
AMSG_02060
Thymidylate kinase.
  
 
 0.642
AMSG_03004
40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.
  
 
 0.622
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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