STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_10879ATP-binding cassette sub-family F member 1. (639 aa)    
Predicted Functional Partners:
AMSG_00448
Uncharacterized protein.
   
 
 0.711
AMSG_03144
ABC transporter E family member 2.
   
 
 0.705
AMSG_03004
40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.
  
 
 0.692
AMSG_01669
50S ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.
  
 
 0.689
AMSG_01103
40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.
   
 
 0.682
AMSG_04936
Eukaryotic translation initiation factor 2 subunit alpha.
   
 0.681
AMSG_03569
Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
   
 
 0.680
AMSG_12333
Uncharacterized protein.
  
   0.680
AMSG_06696
Glutathione S-transferase domain-containing protein; Belongs to the GST superfamily.
   
 
 0.677
AMSG_06187
Ribosomal protein L35.
   
 
 0.676
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.