STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_10618Auxin transporter. (5977 aa)    
Predicted Functional Partners:
AMSG_07797
ZZ-type domain-containing protein.
    
 
 0.912
AMSG_07672
E3 ubiquitin-protein ligase UPL3.
   
 
 0.660
AMSG_02580
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
   
  
 0.621
AMSG_02514
Ubiquitin-activating enzyme E1.
   
 
 0.535
AMSG_02028
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.
   
 
 0.535
AMSG_02805
E3 ubiquitin-protein ligase RNF123.
   
  0.511
AMSG_06435
Ubiquitin-activating enzyme E1.
   
 
 0.508
AMSG_01266
Ubiquitin-activating enzyme E1.
   
 
 0.508
AMSG_01916
Ubiquitin-activating enzyme E1.
   
 
 0.508
AMSG_05877
ThiF domain-containing protein.
   
 
 0.507
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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