AMSG_10953 protein (Thecamonas trahens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AMSG_10953

ANK_REP_REGION domain-containing protein. (1223 aa)

Predicted Functional Partners:

AMSG_05333

0.671

AMSG_01883

0.628

AMSG_11845

0.608

AMSG_12190

0.608

AMSG_12313

0.608

AMSG_00728

0.587

KATNAL2

0.577

AMSG_03070

0.576

AMSG_02492

0.573

AMSG_01478

0.573

Your Current Organism:

Thecamonas trahens

NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMSG_00728	AMSG_01883	A0A0L0DE32	A0A0L0DTG9	Intraflagellar transport 81.	GP-PDE domain-containing protein.	0.661
AMSG_00728	AMSG_03070	A0A0L0DE32	A0A0L0D5Q8	Intraflagellar transport 81.	Uncharacterized protein.	0.989
AMSG_00728	AMSG_10953	A0A0L0DE32	A0A0L0DSR2	Intraflagellar transport 81.	ANK_REP_REGION domain-containing protein.	0.587
AMSG_00728	AMSG_11845	A0A0L0DE32	A0A0L0D9R3	Intraflagellar transport 81.	PI31_Prot_N domain-containing protein.	0.721
AMSG_00728	AMSG_12190	A0A0L0DE32	A0A0L0DMX2	Intraflagellar transport 81.	Uncharacterized protein.	0.721
AMSG_00728	AMSG_12313	A0A0L0DE32	A0A0L0DQE5	Intraflagellar transport 81.	Uncharacterized protein.	0.721
AMSG_01478	AMSG_01883	A0A0L0DQQ6	A0A0L0DTG9	Uncharacterized protein.	GP-PDE domain-containing protein.	0.731
AMSG_01478	AMSG_02492	A0A0L0DQQ6	A0A0L0D5I5	Uncharacterized protein.	Ubiquitin-conjugating enzyme family protein.	0.894
AMSG_01478	AMSG_05333	A0A0L0DQQ6	A0A0L0DAF0	Uncharacterized protein.	Enoyl-CoA hydratase/isomerase.	0.563
AMSG_01478	AMSG_10953	A0A0L0DQQ6	A0A0L0DSR2	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.573
AMSG_01478	AMSG_11845	A0A0L0DQQ6	A0A0L0D9R3	Uncharacterized protein.	PI31_Prot_N domain-containing protein.	0.540
AMSG_01478	AMSG_12190	A0A0L0DQQ6	A0A0L0DMX2	Uncharacterized protein.	Uncharacterized protein.	0.540
AMSG_01478	AMSG_12313	A0A0L0DQQ6	A0A0L0DQE5	Uncharacterized protein.	Uncharacterized protein.	0.540
AMSG_01478	KATNAL2	A0A0L0DQQ6	A0A0L0DVJ4	Uncharacterized protein.	Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.	0.723
AMSG_01883	AMSG_00728	A0A0L0DTG9	A0A0L0DE32	GP-PDE domain-containing protein.	Intraflagellar transport 81.	0.661
AMSG_01883	AMSG_01478	A0A0L0DTG9	A0A0L0DQQ6	GP-PDE domain-containing protein.	Uncharacterized protein.	0.731
AMSG_01883	AMSG_02492	A0A0L0DTG9	A0A0L0D5I5	GP-PDE domain-containing protein.	Ubiquitin-conjugating enzyme family protein.	0.731
AMSG_01883	AMSG_03070	A0A0L0DTG9	A0A0L0D5Q8	GP-PDE domain-containing protein.	Uncharacterized protein.	0.630
AMSG_01883	AMSG_05333	A0A0L0DTG9	A0A0L0DAF0	GP-PDE domain-containing protein.	Enoyl-CoA hydratase/isomerase.	0.605
AMSG_01883	AMSG_10953	A0A0L0DTG9	A0A0L0DSR2	GP-PDE domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.628