STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_01439Acyl-CoA synthetase. (873 aa)    
Predicted Functional Partners:
AMSG_02163
Sterol-binding domain-containing protein.
  
 
 0.701
AMSG_08067
Ubiquitin/ribosomal protein S27 fusion protein.
    
  0.617
AMSG_04841
Long-chain-fatty-acid-CoA ligase 3.
  
0.614
AMSG_01185
Uncharacterized protein.
    
 0.604
AMSG_11815
PKS_AT domain-containing protein.
    
 0.580
AMSG_10531
Acyl dehydratase.
  
 
 0.577
AMSG_07133
Serine-protein kinase ATM; Belongs to the PI3/PI4-kinase family.
   
 0.576
AMSG_12329
Uncharacterized protein.
    
  0.575
AMSG_11874
Ubiquitin-like domain-containing protein.
    
  0.562
AMSG_10625
Ubiquitin-60S ribosomal protein L40.
    
  0.562
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.