STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_11427Peptidase M1. (1036 aa)    
Predicted Functional Partners:
AMSG_04084
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
    
 0.594
AMSG_05721
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
    
 0.594
AMSG_08067
Ubiquitin/ribosomal protein S27 fusion protein.
    
  0.593
AMSG_02509
Succinyl-diaminopimelate desuccinylase.
   
 0.590
AMSG_04307
Succinyl-diaminopimelate desuccinylase.
   
 0.590
AMSG_09396
WD repeat protein.
   
 0.590
AMSG_03477
Aspartate aminotransferase.
   
 0.579
AMSG_05923
Aspartate aminotransferase.
   
 0.579
AMSG_06189
Aspartate aminotransferase.
   
 0.579
AMSG_10612
Rhodanese domain-containing protein.
  
 
 0.578
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.