STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_01777Matrix attachment region binding protein. (520 aa)    
Predicted Functional Partners:
AMSG_03715
Nucleolar protein Nop56.
  
0.993
AMSG_01735
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
 0.986
AMSG_08616
WD_REPEATS_REGION domain-containing protein.
   
 0.984
AMSG_10656
BP28CT domain-containing protein.
   
 0.984
AMSG_08211
WD40 repeat-containing protein.
   
 0.982
AMSG_05799
WD repeat protein SAZD.
   
 0.978
AMSG_04489
Wd-repeat protein.
   
 0.975
AMSG_05418
U3 small nucleolar RNA-interacting protein 2.
   
 0.974
AMSG_07606
U3 small nucleolar RNA-associated protein.
   
 0.972
AMSG_06241
Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.
   
 0.970
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.