STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_01827SANT domain-containing protein. (563 aa)    
Predicted Functional Partners:
AMSG_02980
TATA-box-binding protein 2.
    
 0.998
AMSG_00796
DNA-directed RNA polymerase III subunit RPC6.
    
 0.972
AMSG_01039
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.969
AMSG_00827
Uncharacterized protein.
    
 0.966
AMSG_07666
Uncharacterized protein.
    
 0.955
AMSG_02303
Transcription factor IIIB 60 kDa subunit.
    
 0.955
AMSG_02687
Uncharacterized protein.
    
 0.954
AMSG_04145
Uncharacterized protein.
    
 0.953
AMSG_10747
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.953
AMSG_05749
Uncharacterized protein.
   
 0.945
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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