STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMSG_02241Charged multivesicular body protein 3. (214 aa)    
Predicted Functional Partners:
AMSG_07480
Charged multivesicular body protein 4a.
   
 0.997
AMSG_01751
Charged multivesicular body protein 2a.
   
0.997
AMSG_05652
Charged multivesicular body protein 1.
 
 
 0.988
AMSG_09237
SNF7 family protein.
    
 0.988
AMSG_05838
Charged multivesicular body protein 6-A.
   
 0.975
AMSG_09959
Charged multivesicular body protein 5.
   
 0.951
AMSG_11969
Uncharacterized protein.
   
0.917
AMSG_05584
Uncharacterized protein; Belongs to the AAA ATPase family.
   
 0.890
AMSG_09099
Vacuolar protein sorting-associated protein 4.
   
 0.890
AMSG_00375
Uncharacterized protein.
    
 0.840
Your Current Organism:
Thecamonas trahens
NCBI taxonomy Id: 461836
Other names: Amastigomonas sp. ATCC 50062, T. trahens ATCC 50062, Thecamonas trahens ATCC 50062
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.