STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK17476.1Ferrous iron transport protein B. (784 aa)    
Predicted Functional Partners:
SEK17478.1
Ferrous iron transport protein A.
 
  
 0.862
SEK17482.1
Ferrous iron transport protein B.
 
  
0.814
SEK17480.1
Ferrous iron transport protein A.
 
  
0.808
SEK17474.1
Carbamate kinase; Belongs to the carbamate kinase family.
       0.773
SEK17472.1
VanZ like family protein.
       0.761
SEK54462.1
Cu2+-exporting ATPase.
  
 
 0.716
SEK27322.1
Predicted DNA-binding protein, UPF0251 family.
 
   
 0.702
SEK95729.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
     
 0.638
topA
DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
      
 0.626
SEK53418.1
Ribonucleoside-triphosphate reductase class III catalytic subunit.
     
 0.618
Your Current Organism:
Pseudobutyrivibrio ruminis
NCBI taxonomy Id: 46206
Other names: DSM 9787, P. ruminis, strain A12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.