STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK17940.1Hypothetical protein. (45 aa)    
Predicted Functional Partners:
SEK17948.1
Putative ABC transport system substrate-binding protein.
       0.487
SEK17956.1
Putative ABC transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.487
SEK17965.1
Putative ABC transport system ATP-binding protein.
       0.487
SEK17911.1
Coenzyme PQQ synthesis protein D (PqqD).
       0.456
SEK17925.1
Putative oligopeptide transporter, OPT family.
       0.456
Your Current Organism:
Pseudobutyrivibrio ruminis
NCBI taxonomy Id: 46206
Other names: DSM 9787, P. ruminis, strain A12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.