STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK18265.1Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (498 aa)    
Predicted Functional Partners:
SEK18254.1
Ribose transport system substrate-binding protein.
 
 
   0.967
SEK18279.1
Two-component system, response regulator YesN.
 
 
 0.964
SEK27400.1
LytTr DNA-binding domain-containing protein.
  
  0.953
SEK18293.1
D-xylose transport system substrate-binding protein.
 
     0.862
SEK99749.1
Two-component system, sensor histidine kinase YesM.
 
  
 
0.765
SEK92240.1
Two-component system, response regulator YesN.
 
 0.742
SEK22660.1
Two component transcriptional regulator, LytTR family.
 
 
 0.740
SEK99789.1
Two-component system, response regulator YesN.
 
 0.724
SEK31788.1
Two-component system, response regulator YesN.
 
 0.703
SEK18242.1
Hypothetical protein.
 
     0.677
Your Current Organism:
Pseudobutyrivibrio ruminis
NCBI taxonomy Id: 46206
Other names: DSM 9787, P. ruminis, strain A12-1
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