STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK20163.1Stress responsive A/B Barrel Domain. (100 aa)    
Predicted Functional Partners:
SEK33150.1
Hypothetical protein.
 
     0.875
SEK20120.1
O-6-methylguanine DNA methyltransferase.
       0.678
SEK20137.1
Arsenate reductase.
       0.678
SEK20094.1
Protein-S-isoprenylcysteine O-methyltransferase Ste14.
       0.606
nfo
Endonuclease IV; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin.
       0.550
SEK20184.1
Signal transduction histidine kinase.
       0.517
SEK20202.1
Multiple sugar transport system substrate-binding protein.
       0.517
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
   
    0.502
SEK20056.1
DNA repair photolyase.
       0.459
SEK35610.1
Transcriptional regulator, TetR family.
 
     0.440
Your Current Organism:
Pseudobutyrivibrio ruminis
NCBI taxonomy Id: 46206
Other names: DSM 9787, P. ruminis, strain A12-1
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