STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK20549.1Helix-turn-helix. (114 aa)    
Predicted Functional Partners:
SEK20570.1
Cation diffusion facilitator family transporter.
       0.773
SEK20598.1
Phosphoglucomutase.
     
 0.714
SEL04473.1
Uncharacterized conserved protein, contains FIST_N domain.
  
     0.665
SEK72463.1
Inositol transport system substrate-binding protein.
  
     0.655
SEK28322.1
Nicotinamide-nucleotide amidase.
    
 0.603
SEK20529.1
Diguanylate cyclase (GGDEF) domain-containing protein.
       0.556
SEK91658.1
Inositol transport system substrate-binding protein.
  
     0.527
SEK52541.1
YARHG domain-containing protein.
  
     0.526
SEK70866.1
Serine/threonine-protein kinase HipA.
  
 
 0.524
SEK20687.1
Hypothetical protein.
  
     0.500
Your Current Organism:
Pseudobutyrivibrio ruminis
NCBI taxonomy Id: 46206
Other names: DSM 9787, P. ruminis, strain A12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.