STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK22104.1Hypothetical protein. (172 aa)    
Predicted Functional Partners:
SEK22130.1
Hypothetical protein.
       0.768
SEK22147.1
Hypothetical protein.
       0.736
SEK22175.1
Hypothetical protein.
       0.728
SEK22079.1
Hypothetical protein.
       0.713
SEK22058.1
LPXTG-motif cell wall anchor domain-containing protein.
       0.638
SEK22197.1
Small conductance mechanosensitive channel.
       0.488
SEK22221.1
Hypothetical protein; Belongs to the peptidase M16 family.
       0.473
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
       0.449
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
       0.449
SEK22301.1
Hypothetical protein.
       0.449
Your Current Organism:
Pseudobutyrivibrio ruminis
NCBI taxonomy Id: 46206
Other names: DSM 9787, P. ruminis, strain A12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.