SEK22913.1 protein (Pseudobutyrivibrio ruminis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEK22913.1

Sortase A. (297 aa)

Predicted Functional Partners:

SEK22884.1

0.922

SEK22935.1

0.795

SEK23125.1

0.780

SEK22961.1

0.773

SEK22857.1

0.755

SEK23040.1

0.720

SEK22990.1

0.706

SEK23015.1

0.699

SEK23064.1

0.670

SEK23096.1

0.442

Your Current Organism:

Pseudobutyrivibrio ruminis

NCBI taxonomy Id: 46206
Other names: DSM 9787, P. ruminis, strain A12-1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEK22857.1	SEK22884.1	SAMN02910377_00389	SAMN02910377_00390	LPXTG-motif cell wall anchor domain-containing protein/fibro-slime domain-containing protein.	LPXTG-motif cell wall anchor domain-containing protein/fimbrial isopeptide formation D2 domain-containing protein.	0.907
SEK22857.1	SEK22913.1	SAMN02910377_00389	SAMN02910377_00391	LPXTG-motif cell wall anchor domain-containing protein/fibro-slime domain-containing protein.	Sortase A.	0.755
SEK22857.1	SEK22935.1	SAMN02910377_00389	SAMN02910377_00392	LPXTG-motif cell wall anchor domain-containing protein/fibro-slime domain-containing protein.	Sortase A.	0.787
SEK22857.1	SEK22961.1	SAMN02910377_00389	SAMN02910377_00393	LPXTG-motif cell wall anchor domain-containing protein/fibro-slime domain-containing protein.	Hypothetical protein.	0.572
SEK22857.1	SEK22990.1	SAMN02910377_00389	SAMN02910377_00394	LPXTG-motif cell wall anchor domain-containing protein/fibro-slime domain-containing protein.	Hypothetical protein.	0.463
SEK22857.1	SEK23015.1	SAMN02910377_00389	SAMN02910377_00395	LPXTG-motif cell wall anchor domain-containing protein/fibro-slime domain-containing protein.	Hypothetical protein.	0.439
SEK22857.1	SEK23040.1	SAMN02910377_00389	SAMN02910377_00396	LPXTG-motif cell wall anchor domain-containing protein/fibro-slime domain-containing protein.	Conserved repeat domain-containing protein.	0.550
SEK22857.1	SEK23064.1	SAMN02910377_00389	SAMN02910377_00397	LPXTG-motif cell wall anchor domain-containing protein/fibro-slime domain-containing protein.	Hypothetical protein.	0.426
SEK22857.1	SEK23125.1	SAMN02910377_00389	SAMN02910377_00399	LPXTG-motif cell wall anchor domain-containing protein/fibro-slime domain-containing protein.	Sortase B.	0.667
SEK22884.1	SEK22857.1	SAMN02910377_00390	SAMN02910377_00389	LPXTG-motif cell wall anchor domain-containing protein/fimbrial isopeptide formation D2 domain-containing protein.	LPXTG-motif cell wall anchor domain-containing protein/fibro-slime domain-containing protein.	0.907
SEK22884.1	SEK22913.1	SAMN02910377_00390	SAMN02910377_00391	LPXTG-motif cell wall anchor domain-containing protein/fimbrial isopeptide formation D2 domain-containing protein.	Sortase A.	0.922
SEK22884.1	SEK22935.1	SAMN02910377_00390	SAMN02910377_00392	LPXTG-motif cell wall anchor domain-containing protein/fimbrial isopeptide formation D2 domain-containing protein.	Sortase A.	0.922
SEK22884.1	SEK22961.1	SAMN02910377_00390	SAMN02910377_00393	LPXTG-motif cell wall anchor domain-containing protein/fimbrial isopeptide formation D2 domain-containing protein.	Hypothetical protein.	0.614
SEK22884.1	SEK22990.1	SAMN02910377_00390	SAMN02910377_00394	LPXTG-motif cell wall anchor domain-containing protein/fimbrial isopeptide formation D2 domain-containing protein.	Hypothetical protein.	0.489
SEK22884.1	SEK23015.1	SAMN02910377_00390	SAMN02910377_00395	LPXTG-motif cell wall anchor domain-containing protein/fimbrial isopeptide formation D2 domain-containing protein.	Hypothetical protein.	0.478
SEK22884.1	SEK23040.1	SAMN02910377_00390	SAMN02910377_00396	LPXTG-motif cell wall anchor domain-containing protein/fimbrial isopeptide formation D2 domain-containing protein.	Conserved repeat domain-containing protein.	0.589
SEK22884.1	SEK23064.1	SAMN02910377_00390	SAMN02910377_00397	LPXTG-motif cell wall anchor domain-containing protein/fimbrial isopeptide formation D2 domain-containing protein.	Hypothetical protein.	0.463
SEK22884.1	SEK23125.1	SAMN02910377_00390	SAMN02910377_00399	LPXTG-motif cell wall anchor domain-containing protein/fimbrial isopeptide formation D2 domain-containing protein.	Sortase B.	0.534
SEK22913.1	SEK22857.1	SAMN02910377_00391	SAMN02910377_00389	Sortase A.	LPXTG-motif cell wall anchor domain-containing protein/fibro-slime domain-containing protein.	0.755
SEK22913.1	SEK22884.1	SAMN02910377_00391	SAMN02910377_00390	Sortase A.	LPXTG-motif cell wall anchor domain-containing protein/fimbrial isopeptide formation D2 domain-containing protein.	0.922