STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK43956.1N-acylneuraminate cytidylyltransferase. (233 aa)    
Predicted Functional Partners:
SEK43920.1
N-acetylneuraminate synthase.
 
 0.987
SEK89062.1
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase).
 
  0.966
SEK43981.1
Hypothetical protein.
      0.912
SEK43697.1
CBS domain-containing protein.
  
 0.880
SEK44039.1
O-antigen ligase.
  
    0.778
SEK44007.1
Beta-lactamase superfamily domain-containing protein.
       0.773
SEK43641.1
NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family.
 
  
 0.771
SEK43607.1
Capsule polysaccharide biosynthesis protein.
 
   
 0.768
SEK44077.1
Predicted dehydrogenase.
  
  
 0.768
SEK44495.1
CMP-N-acetylneuraminic acid synthetase.
  
     0.763
Your Current Organism:
Pseudobutyrivibrio ruminis
NCBI taxonomy Id: 46206
Other names: DSM 9787, P. ruminis, strain A12-1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.