STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK55513.1Na+/melibiose symporter. (485 aa)    
Predicted Functional Partners:
SEK55542.1
Sugar phosphate isomerase/epimerase.
 
    0.917
SEK55478.1
Beta-glucosidase.
 
    0.896
SEK55559.1
alpha-L-rhamnosidase.
 
     0.808
SEK20802.1
Orotate phosphoribosyltransferase.
 
     0.584
SEK55461.1
AraC-type DNA-binding protein.
       0.544
SEK35515.1
MFS/sugar transport protein.
  
     0.543
SEK17613.1
Cysteine protease, C1A family.
  
     0.506
SEK92870.1
Na+/melibiose symporter.
  
     0.475
SEK17728.1
Acyltransferase family protein.
  
     0.456
SEK55001.1
Uncharacterized membrane protein YesL.
  
     0.448
Your Current Organism:
Pseudobutyrivibrio ruminis
NCBI taxonomy Id: 46206
Other names: DSM 9787, P. ruminis, strain A12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.