STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK66257.1DNA-binding transcriptional regulator, LysR family. (294 aa)    
Predicted Functional Partners:
SEK66324.1
Major Facilitator Superfamily protein.
 
    0.868
SEK66228.1
2,4-dienoyl-CoA reductase.
 
  
 0.860
SEK66296.1
Shikimate dehydrogenase.
 
   
 0.812
SEK66389.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.700
SEL03784.1
DNA-binding transcriptional regulator, LysR family.
  
     0.682
SEK66362.1
3-dehydroquinate dehydratase.
 
     0.660
SEK66448.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
     0.652
SEK66420.1
C4-dicarboxylate transporter, DctM subunit.
 
    0.597
SEK66203.1
Shikimate kinase.
 
   
 0.455
Your Current Organism:
Pseudobutyrivibrio ruminis
NCBI taxonomy Id: 46206
Other names: DSM 9787, P. ruminis, strain A12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.