STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK82913.14Fe-4S single cluster domain. (377 aa)    
Predicted Functional Partners:
SEL06791.1
Response regulator receiver domain-containing protein.
    
 0.924
SEK30448.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
  0.877
SEK53418.1
Ribonucleoside-triphosphate reductase class III catalytic subunit.
     
 0.877
SEK77479.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
  0.772
SEK41746.1
Diguanylate cyclase (GGDEF) domain-containing protein.
   
  0.738
SEK51264.1
Diguanylate cyclase (GGDEF) domain-containing protein.
   
  0.738
SEK82884.1
Hypothetical protein.
       0.718
SEK98141.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
  
  0.705
SEK76493.1
Molybdopterin-guanine dinucleotide biosynthesis protein A.
  
 
 0.695
SEK19725.1
Signal transduction histidine kinase.
    
 0.651
Your Current Organism:
Pseudobutyrivibrio ruminis
NCBI taxonomy Id: 46206
Other names: DSM 9787, P. ruminis, strain A12-1
Server load: low (28%) [HD]