STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK84701.1Hypothetical protein. (326 aa)    
Predicted Functional Partners:
SEK84767.1
Type II secretion system (T2SS), protein F.
 
  
 0.980
SEK84726.1
Hypothetical protein.
 
     0.955
SEK84796.1
Tight adherence protein B.
 
  
 0.954
SEK84626.1
FHA domain-containing protein.
 
     0.931
SEK84815.1
Pilus assembly protein CpaF.
 
  
 0.869
SEK84684.1
Type IV leader peptidase family protein.
  
  
 0.820
SEK65378.1
Cell division protein FtsQ.
  
     0.775
SEK30821.1
Hypothetical protein.
  
     0.774
SEK30860.1
Hypothetical protein.
  
     0.774
SEK40818.1
Hypothetical protein.
  
     0.774
Your Current Organism:
Pseudobutyrivibrio ruminis
NCBI taxonomy Id: 46206
Other names: DSM 9787, P. ruminis, strain A12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.