STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK87602.1Penicillin-binding protein 1A. (863 aa)    
Predicted Functional Partners:
SEK28660.1
Peptidoglycan glycosyltransferase.
 
 
 0.875
SEK62769.1
Penicillin-binding protein 2.
 
 
 0.854
SEK34798.1
SH3 domain-containing protein.
   
 0.803
SEK65451.1
Stage V sporulation protein D (sporulation-specific penicillin-binding protein).
 
 
0.751
SEK62808.1
Rod shape determining protein RodA; Belongs to the SEDS family.
  
 
 
 0.723
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
   
 0.701
SEK65405.1
Cell division protein FtsW; Belongs to the SEDS family.
  
 
 
 0.701
SEK28692.1
Cell division protein FtsW, lipid II flippase.
  
 
 
 0.665
mreC
Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape.
  
 
 0.660
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
  
   
 0.625
Your Current Organism:
Pseudobutyrivibrio ruminis
NCBI taxonomy Id: 46206
Other names: DSM 9787, P. ruminis, strain A12-1
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