STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK90790.1Membrane protein involved in the export of O-antigen and teichoic acid. (487 aa)    
Predicted Functional Partners:
glf
UDP-galactopyranose mutase.
 
  
 0.904
SEK95729.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.886
SEK47371.1
UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase.
  
  
 0.822
SEK48371.1
UDPglucose 6-dehydrogenase.
  
  
 0.804
rfbB
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.803
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
  
 0.802
SEK90966.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
  
 0.788
SEK17490.1
Protein of unknown function.
 
  
 0.785
SEK70807.1
Protein of unknown function.
 
  
 0.775
SEK70777.1
Protein of unknown function.
 
  
 0.774
Your Current Organism:
Pseudobutyrivibrio ruminis
NCBI taxonomy Id: 46206
Other names: DSM 9787, P. ruminis, strain A12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.