STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ldhL-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate. Belongs to the LDH/MDH superfamily. LDH family. (317 aa)    
Predicted Functional Partners:
SEK95729.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.996
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.995
SEK65735.1
Citrate synthase; Belongs to the citrate synthase family.
  
 0.993
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.969
SEK83801.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
 
 0.964
SEK22458.1
Malate dehydrogenase (oxaloacetate-decarboxylating).
  
 0.962
SEK29692.1
Isocitrate dehydrogenase (NADP); Belongs to the isocitrate and isopropylmalate dehydrogenases family.
  
 
 0.961
mgsA
Methylglyoxal synthase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate.
     
 0.961
mgsA-2
Methylglyoxal synthase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate.
     
 0.961
SEK96139.1
NADPH-dependent glutamate synthase beta chain.
  
 0.950
Your Current Organism:
Pseudobutyrivibrio ruminis
NCBI taxonomy Id: 46206
Other names: DSM 9787, P. ruminis, strain A12-1
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