STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK94438.1Uncharacterized membrane protein YoaK, UPF0700 family. (218 aa)    
Predicted Functional Partners:
SEK94470.1
3-methyladenine DNA glycosylase AlkD.
 
     0.859
trmL
tRNA (cytidine/uridine-2'-O-)-methyltransferase; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
      0.792
SEK94496.1
neurotransmitter:Na+ symporter, NSS family.
       0.773
SEK94392.1
Trk system potassium uptake protein TrkA.
       0.523
SEK94418.1
Trk system potassium uptake protein TrkH.
       0.523
SEK94516.1
Hypothetical protein.
       0.513
SEK94549.1
Hypothetical protein.
       0.513
SEK67737.1
ATP-binding cassette, subfamily C.
  
     0.464
SEK67760.1
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components.
  
     0.446
SEK94563.1
Protein of unknown function.
       0.439
Your Current Organism:
Pseudobutyrivibrio ruminis
NCBI taxonomy Id: 46206
Other names: DSM 9787, P. ruminis, strain A12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.