STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK98023.1Putative ABC transport system permease protein. (418 aa)    
Predicted Functional Partners:
SEK98002.1
Putative ABC transport system ATP-binding protein.
 0.998
SEK19268.1
Putative ABC transport system ATP-binding protein.
 0.994
SEK19326.1
Putative ABC transport system ATP-binding protein.
 0.994
SEK98585.1
Putative ABC transport system ATP-binding protein.
 0.994
SEK20628.1
Putative ABC transport system ATP-binding protein.
 0.977
SEK97974.1
Barrel-sandwich domain of CusB or HlyD membrane-fusion.
 
  
 0.972
SEK98081.1
Polar amino acid transport system ATP-binding protein.
      0.943
SEK19256.1
Multidrug efflux pump subunit AcrA (membrane-fusion protein).
 
  
 0.906
SEK19307.1
RND family efflux transporter, MFP subunit.
 
 
 0.902
ccmA
ABC-2 type transport system ATP-binding protein.
 
      0.899
Your Current Organism:
Pseudobutyrivibrio ruminis
NCBI taxonomy Id: 46206
Other names: DSM 9787, P. ruminis, strain A12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.