STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK98558.1HlyD family secretion protein. (398 aa)    
Predicted Functional Partners:
SEK98637.1
Putative ABC transport system permease protein.
 
 
 0.986
SEK98585.1
Putative ABC transport system ATP-binding protein.
 
 
 0.948
SEK98023.1
Putative ABC transport system permease protein.
 
 
 0.853
SEK19287.1
Putative ABC transport system permease protein.
 
 
 0.850
SEK19340.1
Putative ABC transport system permease protein.
 
 
 0.850
SEK98610.1
HlyD family secretion protein.
      
0.802
SEK19268.1
Putative ABC transport system ATP-binding protein.
  
 
 0.724
SEK19326.1
Putative ABC transport system ATP-binding protein.
  
 
 0.724
SEK98002.1
Putative ABC transport system ATP-binding protein.
  
 
 0.724
SEK35869.1
PTS system, D-glucosamine-specific IIC component.
     
 0.715
Your Current Organism:
Pseudobutyrivibrio ruminis
NCBI taxonomy Id: 46206
Other names: DSM 9787, P. ruminis, strain A12-1
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