STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEK99687.1GntR family transcriptional regulator, arabinose operon transcriptional repressor. (322 aa)    
Predicted Functional Partners:
SEK35869.1
PTS system, D-glucosamine-specific IIC component.
    
 0.827
SEK56026.1
PTS system, beta-glucosides-specific IIC component.
    
 0.827
SEK75614.1
LacI family transcriptional regulator.
  
     0.687
SEK54693.1
LacI family transcriptional regulator.
  
     0.659
SEL07355.1
Transcriptional regulator, LacI family.
  
     0.648
SEK71864.1
LacI family transcriptional regulator.
  
     0.621
SEK91123.1
LacI family transcriptional regulator.
  
     0.616
SEK46819.1
DNA-binding transcriptional regulator, LacI/PurR family.
  
     0.615
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 
 0.602
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
  
 
   0.601
Your Current Organism:
Pseudobutyrivibrio ruminis
NCBI taxonomy Id: 46206
Other names: DSM 9787, P. ruminis, strain A12-1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.