STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEL06711.1Uncharacterized protein YhaN. (890 aa)    
Predicted Functional Partners:
SEL06728.1
DNA repair exonuclease SbcCD nuclease subunit.
 
 
 0.975
SEK75069.1
Hypothetical protein.
  
     0.552
SEL06748.1
Haloacid dehalogenase-like hydrolase.
       0.512
SEK84726.1
Hypothetical protein.
  
    0.502
SEK30821.1
Hypothetical protein.
  
     0.437
SEK94973.1
Uncharacterized membrane protein HdeD, DUF308 family.
  
     0.418
SEK17637.1
Protein of unknown function.
  
     0.406
Your Current Organism:
Pseudobutyrivibrio ruminis
NCBI taxonomy Id: 46206
Other names: DSM 9787, P. ruminis, strain A12-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.