STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ19324.1Hypothetical protein. (151 aa)    
Predicted Functional Partners:
SFJ66291.1
CRISPR-associated protein Cmr5.
   
 
 0.806
SFJ66219.1
CRISPR-associated protein Cmr2.
   
 
 0.801
SFJ85610.1
CRISPR-associated protein Cmr2.
   
 
 0.801
SFJ66260.1
CRISPR-associated protein Cmr4.
   
 
 0.745
SFJ85651.1
CRISPR-associated protein Cmr4.
   
 
 0.745
SFJ66193.1
Hypothetical protein.
   
 
 0.459
SFJ85588.1
CRISPR type III-B/RAMP module RAMP protein Cmr1.
   
 
 0.459
Your Current Organism:
Thermoflavimicrobium dichotomicum
NCBI taxonomy Id: 46223
Other names: ATCC 49854, Actinobifida dichotomica, DSM 44778, JCM 9688, KCTC 3667, T. dichotomicum, Thermoactinomyces dichotomica, Thermoactinomyces dichotomicus, Thermomonospora citrina, strain 114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.