STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ66661.1PAS domain S-box-containing protein. (470 aa)    
Predicted Functional Partners:
SFI62492.1
RNA polymerase sigma-54 factor.
 
  
 0.837
SFJ70822.1
Two-component system, NtrC family, sensor kinase.
  
  
 0.788
SFI57866.1
Hypothetical protein.
  
 
 0.773
SFJ66686.1
crotonobetaine/carnitine-CoA ligase.
       0.598
SFJ66726.1
Lactoylglutathione lyase/methylmalonyl-CoA mutase, C-terminal domain/methylmalonyl-CoA/ethylmalonyl-CoA epimerase.
       0.598
SFJ66753.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.491
SFJ66773.1
Hypothetical protein.
       0.491
SFJ66636.1
Short-chain fatty acids transporter.
       0.472
Your Current Organism:
Thermoflavimicrobium dichotomicum
NCBI taxonomy Id: 46223
Other names: ATCC 49854, Actinobifida dichotomica, DSM 44778, JCM 9688, KCTC 3667, T. dichotomicum, Thermoactinomyces dichotomica, Thermoactinomyces dichotomicus, Thermomonospora citrina, strain 114
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