STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B4102_1986Stage II sporulation protein D (SpoIID). (336 aa)    
Predicted Functional Partners:
B4102_2540
Hypothetical protein; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.813
B4102_1987
Stage II sporulation protein related to metaloproteases (SpoIIQ).
 
   
 0.773
B4102_0119
Germination-specific N-acetylmuramoyl-L-alanine amidase, cell wall hydrolase CwlD.
 
 0.693
B4102_3450
FIG007421: forespore shell protein.
 
   
 0.664
B4102_2963
N-acetylmuramoyl-L-alanine amidase.
 
 
 0.659
spoIIAB
Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
   
 0.621
B4102_0633
Stage V sporulation protein AE (SpoVAE).
  
     0.605
B4102_3004
Stage V sporulation protein AE (SpoVAE).
  
     0.599
B4102_1388
Stage IV sporulation protein B.
  
   
 0.586
B4102_1228
Cell division protein FtsI [Peptidoglycan synthetase] / Stage V sporulation protein D (Sporulation-specific penicillin-binding protein).
 
  
 0.551
Your Current Organism:
Bacillus sporothermodurans
NCBI taxonomy Id: 46224
Other names: B. sporothermodurans, CIP 104910, DSM 10599, LMG 17668, LMG 17894, LMG:17668, LMG:17894, strain M215, strain MB 581
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