AFW92978.1 protein (Anabaena sp. 90) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AFW92978.1

Penicillin-binding protein. (755 aa)

Predicted Functional Partners:

AFW92972.1

0.893

lspA

0.805

mrdA

0.799

murC

0.773

AFW96211.1

0.726

AFW95118.1

0.722

mraY

0.716

AFW93112.1

0.684

AFW95385.1

0.678

AFW93297.1

0.663

Your Current Organism:

Anabaena sp. 90

NCBI taxonomy Id: 46234
Other names: A. sp. 90, Anabaena circinalis 90, Anabaena sp. strain 90

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFW92972.1	AFW92978.1	ANA_C10163	ANA_C10170	Putative protein kinase.	Penicillin-binding protein.	0.893
AFW92972.1	AFW93297.1	ANA_C10163	ANA_C10497	Putative protein kinase.	Cell cycle protein; Belongs to the SEDS family.	0.442
AFW92972.1	AFW95118.1	ANA_C10163	ANA_C12389	Putative protein kinase.	Peptidase M23B.	0.461
AFW92972.1	AFW95385.1	ANA_C10163	ANA_C12672	Putative protein kinase.	Penicillin-binding protein.	0.436
AFW92972.1	mrdA	ANA_C10163	ANA_C10654	Putative protein kinase.	Penicillin-binding protein 2.	0.436
AFW92972.1	murC	ANA_C10163	ANA_C12498	Putative protein kinase.	UDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family.	0.479
AFW92978.1	AFW92972.1	ANA_C10170	ANA_C10163	Penicillin-binding protein.	Putative protein kinase.	0.893
AFW92978.1	AFW93112.1	ANA_C10170	ANA_C10307	Penicillin-binding protein.	TPR domain-containing protein.	0.684
AFW92978.1	AFW93297.1	ANA_C10170	ANA_C10497	Penicillin-binding protein.	Cell cycle protein; Belongs to the SEDS family.	0.663
AFW92978.1	AFW95118.1	ANA_C10170	ANA_C12389	Penicillin-binding protein.	Peptidase M23B.	0.722
AFW92978.1	AFW95385.1	ANA_C10170	ANA_C12672	Penicillin-binding protein.	Penicillin-binding protein.	0.678
AFW92978.1	AFW96211.1	ANA_C10170	ANA_C13549	Penicillin-binding protein.	Lytic transglycosylase.	0.726
AFW92978.1	lspA	ANA_C10170	ANA_C10169	Penicillin-binding protein.	Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.	0.805
AFW92978.1	mraY	ANA_C10170	ANA_C13289	Penicillin-binding protein.	phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.	0.716
AFW92978.1	mrdA	ANA_C10170	ANA_C10654	Penicillin-binding protein.	Penicillin-binding protein 2.	0.799
AFW92978.1	murC	ANA_C10170	ANA_C12498	Penicillin-binding protein.	UDP-N-acetylmuramate--alanine ligase; Cell wall formation; Belongs to the MurCDEF family.	0.773
AFW93112.1	AFW92978.1	ANA_C10307	ANA_C10170	TPR domain-containing protein.	Penicillin-binding protein.	0.684
AFW93112.1	AFW95118.1	ANA_C10307	ANA_C12389	TPR domain-containing protein.	Peptidase M23B.	0.550
AFW93112.1	AFW96211.1	ANA_C10307	ANA_C13549	TPR domain-containing protein.	Lytic transglycosylase.	0.735
AFW93297.1	AFW92972.1	ANA_C10497	ANA_C10163	Cell cycle protein; Belongs to the SEDS family.	Putative protein kinase.	0.442