Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFW93396.1 | AFW93397.1 | ANA_C10597 | ANA_C10598 | Hypothetical protein. | Hypothetical protein. | 0.927 |
AFW93396.1 | rcaD | ANA_C10597 | ANA_C10596 | Hypothetical protein. | Transcription factor RcaD. | 0.912 |
AFW93397.1 | AFW93396.1 | ANA_C10598 | ANA_C10597 | Hypothetical protein. | Hypothetical protein. | 0.927 |
AFW93397.1 | AFW96341.1 | ANA_C10598 | ANA_C13688 | Hypothetical protein. | Polypeptide-transport-associated protein FtsQ. | 0.781 |
AFW93397.1 | AFW96604.1 | ANA_C10598 | ANA_C20146 | Hypothetical protein. | VacB and RNase II family 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family. | 0.781 |
AFW93397.1 | AFW96639.1 | ANA_C10598 | ANA_C20183 | Hypothetical protein. | 30S ribosomal protein S1. | 0.763 |
AFW93397.1 | AFW96950.1 | ANA_C10598 | ANA_C20516 | Hypothetical protein. | Ribonuclease II. | 0.781 |
AFW93397.1 | rcaD | ANA_C10598 | ANA_C10596 | Hypothetical protein. | Transcription factor RcaD. | 0.895 |
AFW93397.1 | rph | ANA_C10598 | ANA_C20608 | Hypothetical protein. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.906 |
AFW93397.1 | rpsA | ANA_C10598 | ANA_C11307 | Hypothetical protein. | Ribosomal protein S1. | 0.795 |
AFW93397.1 | rpsD | ANA_C10598 | ANA_C10287 | Hypothetical protein. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.893 |
AFW93397.1 | rpsK | ANA_C10598 | ANA_C11247 | Hypothetical protein. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.867 |
AFW96341.1 | AFW93397.1 | ANA_C13688 | ANA_C10598 | Polypeptide-transport-associated protein FtsQ. | Hypothetical protein. | 0.781 |
AFW96341.1 | rpsD | ANA_C13688 | ANA_C10287 | Polypeptide-transport-associated protein FtsQ. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.587 |
AFW96341.1 | rpsK | ANA_C13688 | ANA_C11247 | Polypeptide-transport-associated protein FtsQ. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.587 |
AFW96604.1 | AFW93397.1 | ANA_C20146 | ANA_C10598 | VacB and RNase II family 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family. | Hypothetical protein. | 0.781 |
AFW96604.1 | rph | ANA_C20146 | ANA_C20608 | VacB and RNase II family 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.947 |
AFW96639.1 | AFW93397.1 | ANA_C20183 | ANA_C10598 | 30S ribosomal protein S1. | Hypothetical protein. | 0.763 |
AFW96639.1 | rph | ANA_C20183 | ANA_C20608 | 30S ribosomal protein S1. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.723 |
AFW96639.1 | rpsA | ANA_C20183 | ANA_C11307 | 30S ribosomal protein S1. | Ribosomal protein S1. | 0.908 |
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