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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aptFABC transporter ATP-binding protein AptF. (765 aa)    
Predicted Functional Partners:
AFW93818.1
GUN4 domain-containing protein.
 
     0.889
aptD
Nonribosomal peptide synthetase anabaenopeptin synthetase AptD.
      
 0.727
aptE
AptE protein; Belongs to the alpha-IPM synthase/homocitrate synthase family.
    
 
 0.723
aptB
Nonribosomal peptide synthetase anabaenopeptin synthetase AptB.
      
 0.715
aptC
Nonribosomal peptide synthetase anabaenopeptin synthetase AptC.
      
 0.715
aptA1
Nonribosomal peptide synthetase anabaenopeptin synthetase AptA1.
      
 0.714
aptA2
Nonribosomal peptide synthetase anabaenopeptin synthetase AptA2.
      
 0.714
AFW96764.1
2-isopropylmalate synthase/homocitrate synthase family protein; Belongs to the alpha-IPM synthase/homocitrate synthase family.
    
 
 0.487
AFW96709.1
IS607 family transposase.
  
     0.449
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
    
   0.416
Your Current Organism:
Anabaena sp. 90
NCBI taxonomy Id: 46234
Other names: A. sp. 90, Anabaena circinalis 90, Anabaena sp. strain 90
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