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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacBD-alanyl-D-alanine carboxypeptidase. (439 aa)    
Predicted Functional Partners:
dacB-2
D-alanyl-D-alanine carboxypeptidase.
  
  
  0.970
AFW94575.1
LD-carboxypeptidase.
 
  
 0.672
AFW94630.1
Ycf66-like protein.
  
     0.627
AFW93089.1
Hypothetical protein.
  
     0.607
AFW94849.1
Hypothetical protein.
  
     0.596
AFW92978.1
Penicillin-binding protein.
     
 0.572
AFW93352.1
ErfK family protein.
     
 0.569
AFW95028.1
UvrD/REP helicase.
  
     0.543
AFW96678.1
1A family penicillin-binding protein.
     
 0.536
AFW95632.1
Hypothetical protein.
  
     0.516
Your Current Organism:
Anabaena sp. 90
NCBI taxonomy Id: 46234
Other names: A. sp. 90, Anabaena circinalis 90, Anabaena sp. strain 90
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