Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fdx1Ferredoxin. (122 aa)    
Predicted Functional Partners:
AFW95040.1
ferredoxin-NADP+ reductase.
  
 
 0.980
hoxF
Hydrogenase subunit HoxF.
  
 0.978
nifU
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
 0.958
petE
Plastocyanin; Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I.
     
 0.942
petJ
Cytochrome c class I; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis.
     
 0.933
AFW93645.1
Cytochrome c class 1.
     
 0.911
AFW94295.1
Ferredoxin.
  
  
 
0.911
fdx2
2Fe-2S ferredoxin.
  
  
0.911
fdxH
2Fe-2S ferredoxin.
  
  
 
0.911
mcyG
Peptide synthetase polyketide synthase fusion protein McyG.
   
 0.849
Your Current Organism:
Anabaena sp. 90
NCBI taxonomy Id: 46234
Other names: A. sp. 90, Anabaena circinalis 90, Anabaena sp. strain 90
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