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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hupSUptake hydrogenase small subunit, HupS. (320 aa)    
Predicted Functional Partners:
hupL
Uptake hydrogenase large subunit; Contains excision element.
 
 0.999
hupW
Hydrogenase maturation protease.
 
  
 0.955
nifJ
Pyruvate-flavodoxin oxidoreductase NifJ; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.
  
  
 0.927
nifJ-2
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin.
  
  
 0.926
hypD
Hydrogenase expression/formation protein HypD.
 
  
 0.918
hypE
Hydrogenase expression/formation protein HypE.
 
   
 0.863
hypC
Hydrogenase expression/formation protein HypC/HupF.
 
 
 0.805
AFW94219.1
Hypothetical protein.
 
     0.786
AFW94240.1
Hypothetical protein.
  
     0.769
hoxY
Hydrogenase subunit HoxY.
     
 0.760
Your Current Organism:
Anabaena sp. 90
NCBI taxonomy Id: 46234
Other names: A. sp. 90, Anabaena circinalis 90, Anabaena sp. strain 90
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