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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccmK2-2Carbon dioxide concentrating mechanism protein. (115 aa)    
Predicted Functional Partners:
ccmL
Carbon dioxide concentrating mechanism protein.
 
 
 
 0.973
AFW95016.1
Microcompartments protein.
 
 
 
 0.743
ccmM
Ribulose bisphosphate carboxylase small chain.
   
 
 0.725
ccmK1
Carbon dioxide concentrating mechanism protein.
 
   
0.634
rbcS
Ribulose-bisphosphate carboxylase small subunit.
   
 
 0.585
rbcL
Ribulose-bisphosphate carboxylase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site.
     
 0.484
ndhD4
NAD(P)H-quinone oxidoreductase subunit D4.
      
 0.472
ndhL
NADH dehydrogenase subunit NdhL.
      
 0.450
glcD
Glycolate oxidase subunit GlcD.
      
 0.450
hisC
Aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
      
 0.448
Your Current Organism:
Anabaena sp. 90
NCBI taxonomy Id: 46234
Other names: A. sp. 90, Anabaena circinalis 90, Anabaena sp. strain 90
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