A0A0R3NG74 protein (Drosophila pseudoobscura)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0R3NG74

Uncharacterized protein, isoform C. (514 aa)

Predicted Functional Partners:

DpseGA13578

0.953

A0A0R3NGZ0

0.857

DpseGA32929

0.847

DpseGA13564

0.824

DpseGA16968

0.751

DpseGA15173

0.596

Cbp20

0.582

DpseGA23404

0.573

Q297A6

0.573

DpseGA14139

0.573

Your Current Organism:

Drosophila pseudoobscura

NCBI taxonomy Id: 46245
Other names: D. pseudoobscura pseudoobscura, Drosophila pseudoobscura pseudoobscura

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0R3NG74	A0A0R3NGZ0	A0A0R3NG74	A0A0R3NGZ0	Uncharacterized protein, isoform C.	Uncharacterized protein, isoform A.	0.857
A0A0R3NG74	Cbp20	A0A0R3NG74	Q293V6	Uncharacterized protein, isoform C.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference via its interaction with Ars2 and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs [...]	0.582
A0A0R3NG74	DpseGA13564	A0A0R3NG74	Q29HJ7	Uncharacterized protein, isoform C.	Uncharacterized protein.	0.824
A0A0R3NG74	DpseGA13578	A0A0R3NG74	Q29JQ2	Uncharacterized protein, isoform C.	Uncharacterized protein; Belongs to the cyclin family.	0.953
A0A0R3NG74	DpseGA14139	A0A0R3NG74	Q2LZ12	Uncharacterized protein, isoform C.	DUF3421 domain-containing protein.	0.573
A0A0R3NG74	DpseGA15173	A0A0R3NG74	Q29IR5	Uncharacterized protein, isoform C.	RRM domain-containing protein.	0.596
A0A0R3NG74	DpseGA16968	A0A0R3NG74	Q29IV8	Uncharacterized protein, isoform C.	Uncharacterized protein, isoform A.	0.751
A0A0R3NG74	DpseGA23404	A0A0R3NG74	B5DQ68	Uncharacterized protein, isoform C.	DUF3421 domain-containing protein.	0.573
A0A0R3NG74	DpseGA32929	A0A0R3NG74	A0A0R3NX39	Uncharacterized protein, isoform C.	Uncharacterized protein.	0.847
A0A0R3NG74	Q297A6	A0A0R3NG74	Q297A6	Uncharacterized protein, isoform C.	Uncharacterized protein.	0.573
A0A0R3NGZ0	A0A0R3NG74	A0A0R3NGZ0	A0A0R3NG74	Uncharacterized protein, isoform A.	Uncharacterized protein, isoform C.	0.857
A0A0R3NGZ0	Cbp20	A0A0R3NGZ0	Q293V6	Uncharacterized protein, isoform A.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference via its interaction with Ars2 and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs [...]	0.760
A0A0R3NGZ0	DpseGA15173	A0A0R3NGZ0	Q29IR5	Uncharacterized protein, isoform A.	RRM domain-containing protein.	0.631
Cbp20	A0A0R3NG74	Q293V6	A0A0R3NG74	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference via its interaction with Ars2 and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs [...]	Uncharacterized protein, isoform C.	0.582
Cbp20	A0A0R3NGZ0	Q293V6	A0A0R3NGZ0	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference via its interaction with Ars2 and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs [...]	Uncharacterized protein, isoform A.	0.760
Cbp20	DpseGA13578	Q293V6	Q29JQ2	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference via its interaction with Ars2 and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs [...]	Uncharacterized protein; Belongs to the cyclin family.	0.517
Cbp20	DpseGA15173	Q293V6	Q29IR5	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference via its interaction with Ars2 and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs [...]	RRM domain-containing protein.	0.630
Cbp20	DpseGA16968	Q293V6	Q29IV8	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference via its interaction with Ars2 and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs [...]	Uncharacterized protein, isoform A.	0.956
Cbp20	DpseGA32929	Q293V6	A0A0R3NX39	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference via its interaction with Ars2 and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs [...]	Uncharacterized protein.	0.767
DpseGA13564	A0A0R3NG74	Q29HJ7	A0A0R3NG74	Uncharacterized protein.	Uncharacterized protein, isoform C.	0.824